CAM 287

Genetic Testing for Alzheimer’s Disease

Category:Laboratory   Last Reviewed:July 2021
Department(s):Medical Affairs   Next Review:July 2022
Original Date:April 2013    

Description
Alzheimer disease (AD) is a neurodegenerative disease defined by a gradual decline in memory, cognitive functions, gross atrophy of the brain, and an accumulation of extracellular amyloid plaques and intracellular neurofibrillary tangles (Karch, Cruchaga, & Goate, 2014).

Familial Alzheimer disease (FAD) is a rare, inherited form of AD. FAD has a much earlier onset than other forms of Alzheimer disease with symptoms developing in individuals in their thirties or forties..

Regulatory Status
On April 6, 2017 the FDA approved the 23andMe PGS Genetic Health Risk Report for Late-onset Alzheimer Disease, indicated for reporting of the ε4 variant in the APOE gene. The report describes if a person's genetic result is associated with an increased risk of developing Late-onset Alzheimer Disease, but it does not describe a person's overall risk of developing Alzheimer Disease. The ε4 variant included in this report is found and has been studied in many ethnicities. Detailed risk estimates have been studied the most in people of European descent (FDA, 2017a).

Other tests for Alzheimer genes are considered laboratory developed tests (LDT); developed, validated and performed by individual laboratories. LDTs are regulated by the Centers for Medicare and Medicaid (CMS) as high-complexity tests under the Clinical Laboratory Improvement Amendments of 1988 (CLIA’88). As an LDT, the U. S. Food and Drug Administration has not approved or cleared these tests; however, FDA clearance or approval is not currently required for clinical use.  

Policy

  1. Genetic counseling for familial Alzheimer's disease genetic testing is considered MEDICALLY NECESSARY and is recommended.
  2. Genetic testing for APP, PSEN1 and PSEN2 genes associated with familial Alzheimer's disease (i.e., autosomal-dominant, early-onset dementia not attributable to other factors) is considered MEDICALLY NECESSARY when the results of the testing will inform reproductive decision making AND the individual is in one of the following situations:
    1. Individuals with a family history of autosomal dominant dementia with one or more instances of early-onset AD, OR
    2. Individuals with a first-degree biological relative with a known mutation in the PSEN1, PSEN2, or APP genes, OR
    3. Symptomatic individuals with suspected early-onset AD when there is an unknown family history (adoption)

The following does not meet coverage criteria due to a lack of available published scientific literature confirming that the test(s) is/are required and beneficial for the diagnosis and treatment of a patient’s illness.

  1. Genetic testing for Alzheimer's disease is investigational/unproven and therefore considered NOT MEDICALLY NECESSARY in the following situations:
    1. Testing to confirm a diagnosis of Alzheimer's disease (any type)
    2. Testing for familial Alzheimer's disease in children
    3. Testing for late-onset Alzheimer's disease (age >65 years)
    4. Testing for other purposes than reproductive decision making
    5. Testing of APOE gene and/or any other genes not listed above
    6. Testing for purposes of Alzheimer's disease risk assessment
    7. Screening asymptomatic individuals
    8. Testing in all other situations not described above

Rationale
Alzheimer disease (AD) is a devastating neurodegenerative disease with a strong genetic component, and is considered the predominant form of dementia (50–75%). In 2015, over 46 million people lived with dementia worldwide, and this number is estimated to increase to 131.5 million by 2050. The average lifetime risk of developing AD is 10–12%. This risk at least doubles with the presence of a first-degree relative with the disorder. The genetic predisposition of AD, even for late-onset AD patients, is estimated to be 60–80%.

Most patients develop clinical symptoms after the age of 65 (spontaneous or late-onset AD); however, up to 10% of patients have an earlier onset of disease (early-onset AD). AD is characterized by severe neuronal loss, aggregation of extracellular amyloid β plaques, and intraneuronal tau protein tangles resulting in progressive deterioration of memory and cognitive functions. Enormous burden on public health is due to the high costs associated with care and treatment. Aside from drugs that temporarily relieve symptoms, no treatment currently exists for AD.

Autosomal dominant AD is very rare (<1%), but the discovery of fully penetrant pathogenic mutations of Amyloid precursor protein (APP), Presenilin 1 (PSEN1), and Presenilin 2 (PSEN2), inherited in an autosomal dominant fashion, has identified molecular mechanisms and pathways involved in AD pathogenesis and valuable targets currently used in diagnosis and drug development.

One of the primary features of AD is the buildup of amyloid-β protein in the brain. This protein is poisonous to neurons and is normally cleaved by secretases. However, certain genetic mutations may cause these clearing mechanisms to weaken, leading to an overall increase in amyloid-β production. As amyloid-β starts to aggregate in the brain, it creates fibrils that ultimately cause neurological damage such as the characteristic dementia.

APP is proteolytically processed in the constitutive pathway by α- and γ-secretases, resulting in nonpathogenic fragments. However, in the amyloidogenic pathway, subsequent proteolysis of APP by β-secretase and γ-secretase gives rise to a mixture of Aβ peptides with different lengths, of which Aβ1–42 are more aggregation-prone and are predominantly present in amyloid plaques in brains of AD patients. A total of 39 APP mutations have been described; all of which affect proteolysis of APP in favor of Aβ1–42 .

PSEN1 and PSEN2 are highly homologous genes. Both proteins encoded by these genes are essential components of the γ-secretase complex, which catalyzes the cleavage of membrane proteins, including APP. Mutations in PSEN1 and PSEN2 impair the γ-secretase-mediated cleavage of APP, resulting in an increased proportion of Aβ1–42. PSEN1 is located on chromosome 14 whereas PSEN2 is located on chromosome 1. However, PSEN1 is generally associated with a worse prognosis; it has full penetrance compared to 95% penetrance for PSEN2, and age of onset was over 10 years earlier for PSEN1 mutations compared to PSEN2.

Late-onset AD is considered to be multifactorial with a strong but complex genetic predisposition involving gene mutations and polymorphisms that may interact with each other or with environmental factors. The ɛ4 allele of APOE was the only major gene known to increase disease risk for both early-onset and late-onset AD. More recently, genome-wide association studies (GWAS) and massive parallel resequencing (MPS) efforts have identified of at least 21 additional genetic risk loci. These loci, shown in the table below from Van Cauwenberghe et al. (2016), are estimated to explain about 28% of the heritability of liability, 30% of familial risk, and over 50% of sibling recurrence risk of developing AD. Researchers have recently identified a rare missense variant in the CASP7 gene that may be associated with familial late-onset AD, as well as a T allele of the CD33 rs3865444 polymorphism also associated with late-onset AD.

The APOE gene has several alleles, with the ɛ4 allele contributing to an increased risk of late-onset AD and the ɛ2 allele contributing to a decreased risk of late-onset AD compared to the common APOE ɛ3 allele. Researchers now report that APOE influences tau pathology as well as neurodegeneration mediated by tau and microglial responses to AD pathologies; further, APOE ɛ4 is “either pathogenic or shows reduced efficiency in multiple brain homeostatic pathways, including lipid transport, synaptic integrity and plasticity, glucose metabolism and cerebrovascular function.”

Gene Genes in locus Possible candidate genes Function Pathway Effect on APP or tau
MS4A4IMS4A6E locus (chr 11;59,268,00-60,480,00) 17 genes MS4A2, MS4A3, MS4A4A, MS4A4E, MS4A6A, MS4A6E Signal transduction Immune response
HLA-DRB5IHLA-DRB1 locus (chr6:3,609,009-4,535,100) 17 genes Not defined due to the complex genetic organization of the locus Immunocompetence and histocompatibility Immune response
ZCWPW1 locus (chr7:99,905,955-100,093,149)  10 genes ZCWPW1; NYAP1: affecting brain size, neurite elongation, neuronal morphogenesis Epistatic regulation (ZCWPW1); brain and neural development (NYAP1) Neural development
SLC24A4IRIN3 ;pvid z9vjt 14.92,789,411-93,176,224)  2 genes SLC24A4: brain expressionl RIN3: known interactor of BIN1 gene product Neural development and regulation of blood pressure and hypertension Neural development and synapse function
NME8 locus (chr 7:37,779,803-37,992,860)  4 genes NME8: association signal adjacent to the gene Ciliary functions Cytoskeletal function and axonal transport
CELF1 locus (chr11:47,291,161-47,666,021)  10 genes CELF1; MADD: long-term neuronal viability in  AD RNA splicing, editing, and translation )CELF1); long-term neuronal viability (MADD) Cytoskeletal function and axonal transport Tau toxicity

For each locus, the number of genes in each locus is shown with the possible candidate genes. The pathway, function, and effect on APP or tau pathway are reported for each locus
App, amyloid precursor protenl GWAS, genome-wide association studies. 

Chung et al. (2018) conducted genome-wide pleiotropy analyses using these association summary statistics. Significant findings were further examined by expression quantitative trait locus and differentially expressed gene analyses in AD vs. control brains using gene expression data. The authors state that pleiotropy analysis is a useful approach to identifying novel genetic associations with complex diseases and their endophenotypes. However, functional studies are needed to determine whether ECRG4 or HDAC9 is plausible as a therapeutic target.

Clinical Validity and Utility
Early-Onset AD
Comprehensive genetic counseling protocols are available for AD diagnostic and predictive testing to provide a framework for clinicians and geneticists to evaluate which patients may benefit from genetic testing. Available genetic diagnostic and predictive screening for causal mutations of early-onset AD in APPPSEN1, and PSEN2 are only responsible for a small portion of AD patients’ risk. They account for approximately 60%-70% of familial autosomal dominant AD, but less than 10 percent of early-onset AD and less than one percent of AD overall. For a significant number of patients for whom genetic diagnostic screening is requested, the tests will be negative without excluding a genetic cause of disease (Van Cauwenberghe et al., 2016). Furthermore, the identification of a mutation is not a certain predictor of disease or onset age, given that these mutations can vary in terms of penetrance and gene expression. Nevertheless, the ability to identify an explanation for the clustering of AD in a family and the ability to use this toward predictive testing in subsequent generations provide an important step toward autonomy of patients and at-risk individuals. Testing for these highly penetrant mutations often carries significant personal and familial utility which the ACMG (American College of Medical Genetics) has recently supported as important clinical utilities. New mutations in the APPPSEN1, and PSEN2 genes are constantly being identified. For example, two probable pathogenic variants, PSEN2 p.A415S and p.M174I, were recently identified by Wong, Seelaar, Melhem, Rozemuller, and van Swieten (2020).

Janssen et al. (2003) aimed to determine the proportion of patients with early-onset AD with a positive family history that had mutations in the amyloid precursor protein (APP), presenilin 1 (PSEN1), and presenilin 2 (PSEN2) genes. A mutational analysis was performed in 31 probands with probable or definite AD from UK families (age at onset <61 years). A total of 23 patients fulfilled criteria for autosomal dominant inheritance. In 17 (55%) probands the authors identified eight novel PSEN1 sequence variants and eight recognized pathogenic mutations. In four (13%) probands the authors identified one novel APP sequence variant (H677R) and two recognized mutations. Further, 21 of 31 (68%) probands were associated with a sequence variant in APP or PSEN1. Nine of the 11 (82%) probands with neuropathologically confirmed AD who additionally fulfilled recognized criteria for autosomal dominant inheritance were associated with a sequence variant in APP or PSEN1. The 10 patients in whom the authors were unable to identify a mutation in APP, PSEN1, or PSEN2 were older than the probands with sequence variants (55.4 vs 44.7 years, respectively). The authors concluded that sequence variants in APP and PSEN1 accounted for the majority of neuropathologically confirmed autosomal dominant early-onset AD.

Shea et al. (2016) conducted a study to assess the differences in clinical presentations of different genotypes of FAD. A total of 658 pedigrees were evaluated. The authors found that patients with PSEN1 mutations tended to have earlier age of onset than either PSEN2 or APP mutations. Patients with PSEN1 were also more commonly affected by symptoms such as seizures or myoclonus, whereas patients with PSEN2 mutations were more commonly affected by disorientation. Patients with APP mutations were more likely to present with aggression or apraxia.

Lanoiselee et al. (2017) completed a large genetic screening study of familial and sporadic cases of APP, PSEN1, and PSEN2 mutations in early-onset AD. Data was taken from 23 French hospitals from 1993 onward; the total number of families identified with mutations was 170 (these families were required to have two first-degree relatives with early-onset AD with an age of onset ≤65 years). One hundred and twenty-nine sporadic cases were also screened with an age of onset ≤51 years. The authors not that “APP, PSEN1, or PSEN2 mutations were identified in 53 novel AD-EOAD [early-onset AD] families. Of the 129 sporadic cases screened, 17 carried a PSEN1 mutation and 1 carried an APP duplication (13%); this led to the conclusion that a portion of PSEN1 mutations occur de novo.

Giau et al. (2019) screened 67 de novo early-onset AD cases by next-generation sequencing (NGS) to identify pathogenic variants linked to neurodegenerative disorders in the Korean population. They were able to find three missense mutations in PSEN1 and a variant in PSEN2 within 6% of the cases with early onset AD, but also found “67 missense mutations in susceptibility genes for late-onset AD… which may be involved in cholesterol transport, inflammatory response, and β-amyloid modulation.” They also found “70 additional novel and missense variants in other genes, such as MAPT, GRN, CSF1R, and PRNP, related to neurodegenerative diseases, which may represent overlapping clinical and neuropathological features with AD.” Multiple rare variants were found among this patient population as well.

Qin et al. (2020) conducted an analysis on the genotype and phenotype correlation for early onset familial AD in a Chinese population. With respect to specific mutations, the researchers found that for APP mutations, the clinical phenotype was relatively heterogeneous, with an average age at onset ranging from the 40s-50s and clinical presentations of “cognitive dysfunction, especially executive dysfunction and disorientation. Extrapyramidal signs, behavioral, and psychiatric symptoms could also be detected in Chinese APP EOFAD [early onset familial Alzheimer’s disease mutations].” For those with PSEN1 mutations, the age at onset was in the early 40s, and with an amnestic cognitive profile, as well as myoclonus and seizures. “Extrapyramidal signs, behavioral, and psychiatric symptoms (anxiety, hallucinations, delusions) and ataxia are significantly more frequently found in EOFAD with PSEN1 mutations.” PSEN2 mutations were found to be the least common, and “compared to PSEN1 mutation carriers, carriers with PSEN2 mutations have a later AAO, relatively longer disease duration and a more variable disease expression.” Overall, the researchers found that most of the mutations in China were novel in comparison to pathogenic variants among Caucasians.

Several companies have developed hereditary AD panels. The Invitae Hereditary Alzheimer Disease (AD) Panel tests for three genes associated with early-onset hereditary AD: APP, PSEN1 and PSEN2. This test may utilize a blood, DNA or saliva sample and has a 10-21-day turnaround time. The ADmark® Early Onset Alzheimer's Evaluation also tests for the three known early-onset hereditary AD genes: APP, PSEN1 and PSEN2 (Athena, 2020b). This test detects sequence variants in these genes, as well as duplications in the APP gene. A whole blood sample is required, and a turnaround time of 21-28 days can be expected.

Another panel by Fulgent, termed the Parkinson-Alzheimer-Dementia NGS panel, tests for 35 genes that are associated with developing Parkinson disease, Alzheimer disease and dementia. Some of the genes tested in this panel include APOE, APP, PSEN1 and PSEN2. This test also requires a blood sample or buccal swab and has a three-week turnaround time.

Late-Onset AD
The primary gene associated with late-onset AD is the apolipoprotein E (APOE) gene on chromosome 19, particularly its epsilon (ɛ) allele. This apolipoprotein is thought to play a role in cholesterol homeostasis and aid in removal of the amyloid- β protein that is at the core of AD. There are three isoforms of this allele: ɛ2, ɛ3, and ɛ4. The ɛ4 allele binds much more rapidly to the amyloid protein; however, it is less efficient than the other two alleles in protein transfer. These characteristics combined have made the ɛ4 allele a potential genetic risk factor of AD.

The role of genetics in diagnosis and risk prediction in late-onset AD is much less straightforward. APOE ɛ4 is associated with changes in lipid metabolomics in AD patients, and is likely a factor in even the early stages of AD development (Pena-Bautista et al., 2020). Further, it has been suggested that APOE ɛ4 is a selective risk factor, affecting memory-related AD manifestations of the disease more than language-related implications. Despite the established evidence of APOE ɛ4 as a risk factor for AD, its value in disease prediction in a clinical setting is limited, and the relevance of clinical testing for common genetic variations identified in GWAS is even more limited. Combining multiple susceptibility loci into a global genetic risk score (GRS) might improve the prediction of individuals at risk. However, the most comprehensive risk prediction model developed to date only achieved a sensitivity of 55% and a specificity of 78%, impeding use in clinical practice.

Neu et al. (2017) performed a global meta-analysis of 27 observational studies in more than 58,000 adults and found that those with only one copy of APOE ε4 did not see any difference in risk of developing Alzheimer’s disease from ages 55-85. However, the authors did find that women from 65-75 with one copy of APOE ε4 were at higher risk than men of the same age (odds ratio of 4.37 for women, 3.14 for men). Both genders were found to have higher risk of mild cognitive impairment with any additional copies of the ε4 allele compared to ε2 or ε3.

Naj et al. (2014) assessed the effect of APOE alleles on average age of onset in AD patients. Fourteen studies containing 9,162 patients were examined, and the APOE allele was found to contribute 3.9% of the variation of age of onset. Each copy of the ε4 was found to reduce the age of onset by 2.45 years.

Cohn-Hokke et al. (2017) examined the social and personal effects of testing for hereditary neurodegenerative diseases from 74 patient survey responds. The authors concluded that “the result of predictive testing on adult-onset neurodegenerative diseases does not have a large negative effect on social and personal life, although these observations should be interpreted with caution because of the small number of participants and low response rate.”

The ancestral APOE ɛ4 risk of AD has been studied across Puerto Rican and African American populations. A total of 1,986 participants with late-onset AD (1,766 African Americans and 220 Puerto Ricans) and 3,899 healthy controls older than 65 years of age (3,730 African Americans and 169 Puerto Ricans) participated in this study. The authors note that “APOE ε4 alleles on an African background conferred a lower risk than those with a European ancestral background, regardless of population.” This study shows that the risk conferred by the APOE ε4 allele differs across populations; the cause of this risk is unknown but may be due to genetic variation, environmental factors, or cultural factors associated with ancestry.

Athena diagnostics developed the ADmark® ApoE Genotype Analysis and Interpretation test which detects APOE ɛ2, ɛ3, ɛ4 alleles. Athena will not perform this test on individuals younger than 18 years of age and recommends pre and post-test genetic counseling; a whole blood sample is required and a turnaround time of 7-14 days can be expected.

American College of Medical Genetics and Genomics (ACMG) and National Society of Genetic Counselors (NSGC)
The American College of Medical Genetics and Genomics (ACMG) and the National Society of Genetic Counselors (NSGC) issued joint practice guidelines related to the genetic assessment of AD. These guidelines include the following recommendations: 

  • “Pediatric testing for AD should not occur.” 
  • “Prenatal testing for AD is not advised if the patient intends to continue a pregnancy with a mutation.”
  • “Genetic testing for AD should only occur in the context of genetic counseling (in-person or through videoconference) and support by someone with expertise in this area. Symptomatic patients: Genetic counseling for symptomatic patients should be performed in the presence of the individual’s legal guardian or family member.”
  • “DTC (direct to consumer) APOE testing is not advised.”
  • “A risk assessment should be performed by pedigree analysis to determine whether the family history is consistent with EOAD [early-onset AD] or LOAD (late-onset AD) and with autosomal dominant (with or without complete penetrance), familial or sporadic inheritance.”

For families in which an autosomal dominant AD gene mutation is a possibility: 

  • “Testing for genes associated with early-onset autosomal dominant AD should be offered in the following situations:“
    • “A symptomatic individual with EOAD in the setting of a family history of dementia or in the setting of an unknown family history (e.g., adoption).
    • “Autosomal dominant family history of dementia with one or more cases of EOAD.” 
    • “A relative with a mutation consistent with EOAD (currently PSEN1/2 or APP).”
  • Ideally, an affected family member should be tested first. If no affected family member is available for testing and an asymptomatic individual remains interested in testing despite counseling about the low likelihood of an informative result (a positive result for a pathogenic mutation), he/she should be counseled according to the recommended protocol. If the affected relative, or their next of kin, is uninterested in pursuing tested, the option of DNA banking should be discussed.”

For families in which an autosomal dominant AD is unlikely: 

  • “Discuss that both sporadic and familial cases can be due to a genetic susceptibility. Risk estimates are only available for first-degree relatives of an affected individual in sporadic or familial cases.”
  • “Genetic testing for susceptibility loci (e.g., APOE) is not clinically recommended due to limited clinical utility and poor predictive value. If a patient wishes to pursue testing despite genetic counseling and recommendations to the contrary, testing may be considered at the clinician’s discretion.” 

Finally, the authors comment that “in general, clear genotype-phenotype correlations cannot typically be made for the three causative genes, and age of onset can vary more than 20 years within the same family”.

In 2019, an addendum was published for the aforementioned guidelines. The ACMB board of directors reaffirmed these guidelines (as of June 25, 2018) with two changes: 

  • “To use the phrase “pathogenic variant” rather than the word “mutation” in discussing pathogenic variants related to autosomal dominant early-onset Alzheimer disease. This would be consistent with current ACMG/AMP Guidelines for Variant Interpretation and Reporting.
  • Because this document no longer meets the criteria for an evidence-based practice guideline by either the American College of Medical Genetics and Genomics (ACMG) or National Society of Genetic Counselors (NSGC), NSGC reclassified this document as a Practice Resource in 2016, and ACMG is also classifying it as a Practice Resource as of this reaffirmation”.

American College of Medical Genetics and Genomics (ACMG)
In the Choosing Wisely Initiative, the ACMG recommended “Don’t order APOE genetic testing as a predictive test for Alzheimer's disease.” The rationale for the recommendation is that “APOE is a susceptibility gene for later-onset Alzheimer disease (AD), the most common cause of dementia. The presence of an ε4 allele is neither necessary nor sufficient to cause AD. The relative risk conferred by the ε4 allele is confounded by the presence of other risk alleles, gender, environment and possibly ethnicity. APOE genotyping for AD risk prediction has limited clinical utility and poor predictive value.”

American Academy of Neurology (AAN)
In 2001 (reaffirmed in 2004), AAN made the following recommendation on the use of genetic testing for Alzheimer’s disease: 

  • Routine use of APOE genotyping in patients with suspected AD is not recommended at this time (Guideline).
  • There are no other genetic markers recommended for routine use in the diagnosis of AD (Guideline).

National Institute on Aging (NIH)
In 2011, Alzheimer’s Disease diagnostic guidelines were revised including latest research results and better scientific understanding of the disease. The development of the new guidelines was led by the National Institute of Health and the Alzheimer’s Association. Diagnostic criteria for Alzheimer’s disease were re-defined. In respect to genetic testing, NIH issued following guidance and recommendations: “A rare type of familial Alzheimer’s disease, called Early-Onset Alzheimer’s Disease (EOAD), is caused by mutations in the amyloid precursor protein, presenilin 1, or presenilin 2 genes. A person who inherits any of these mutations from a parent will almost surely develop Alzheimer’s dementia before age 65. Genetic testing for the disease is common in families with a history of EOAD”; “The major genetic risk factor for the more common, sporadic form of the disease, or Late-Onset Alzheimer’s disease (LOAD), is the ε4 allele of the APOE gene. But carrying this allele by itself does not mean a person has or will develop Alzheimer’s dementia, so genetic testing for APOE ε4 is not recommended outside of a research setting.”

The NIH and Alzheimer’s Association released a joint research framework in 2018. In that framework, they state that “Genetics is not formally included in the research framework because our concept of disease rests on neuropathologic change (that can be detected by biomarkers). In contrast, gene variants do not measure pathologic change but rather indicate an individual's risk for developing pathologic change.”

The Alzheimer’s Association Medical and Scientific Advisory Council
The Alzheimer’s Association Medical and Scientific Advisory Council published a genetic testing statement in 2017. This document states that “For individuals from families in which dementia is of the late-onset type, or in which there is only one additional affected individual, screening for the deterministic genes is not recommended.” Further, the AA “strongly recommends that people receive genetic counseling before a test is ordered and when the results are obtained.”

Canadian Consensus Conference on Diagnosis and Treatment of Dementia
Fourth Canadian Consensus Conference

Expert committee members helped to revise guidelines for the fourth consensus committee on the diagnosis and treatment of dementia. These guidelines note that “All patients with early-onset dementia should be referred to a memory clinic, preferably one with access to genetic counseling and testing when available”. That comment were not endorsed or mentioned in the Fifth Canadian Consensus Conference held in October 2019.

European Federation of Neurological Societies (EFNS) and European Neurological Society (ENS)
The EFNS and ENS have developed guidelines for the diagnosis and management of disorders associated with dementia. Regarding genetic testing, these guidelines state that “No studies have addressed the value of genetic counselling for patients with dementia or their families when autosomal‐dominant disease is suspected. Because the genetics of dementing illnesses is a very young field, expertise in genetic counselling for the dementias of the elderly is likely to be found only in specialized dementia research centres (Good Practice Point). Screening for known pathogenic mutations can be undertaken in patients with appropriate phenotype or a family history of an autosomal‐dominant dementia. This should only be undertaken in specialist centres with appropriate counselling of the patient and family caregivers, and with consent (Good Practice Point). Pre‐symptomatic testing may be performed in adults where there is a clear family history, and when there is a known mutation in an affected individual to ensure that a negative result is clinically significant. (Good Practice Point)”.

European Federation of Neurological Sciences (EFNS)
In 2010, EFNS published revised recommendations on the diagnosis and management of Alzheimer disease. It stated that “the ApoE 4 allele is the only genetic factor consistently implicated in late-onset AD, but it is neither necessary nor sufficient for development of the disease. Hence, there is no evidence to suggest ApoE testing is useful in a diagnostic setting.” The EFNS recommended that “screening for known pathogenic mutations can be undertaken in patients with appropriate phenotype or a family history of an autosomal dominant dementia. Routine Apo E genotyping is not recommended.”

United States Preventive Services Task Force (USPSTF)
The USPSTF has concluded that “the current evidence is insufficient to assess the balance of benefits and harms of screening for cognitive impairment in older adults.”

Italian Dominantly Inherited Alzheimer's and Frontotemporal Network (IT-DIAfN) Project
The IT-DIAfN project reached a consensus in 2016 on a protocol for patients with “clinically diagnosed familial AD [Alzheimer’s disease] or FTLD [frontotemporal lobar degeneration] and a distinct protocol for their at-risk relatives.” In relation to genetic counseling, the guideline suggests that it “should be provided by a multidisciplinary team including a geneticist, a neurologist/geriatrician, and a psychologist/psychiatrist, according to the following schedule: (i) initial consultation with tailored information on the genetics of the dementias; (ii) clinical, psychological, and cognitive assessment; if deemed appropriate (iii) genetic testing following a structured decision tree for gene mutation search; (iv) genetic testing result disclosure; (v) psychological support follow-up”..

With regards to specific genetic testing, the researchers developed a flow chart for genetic testing to search for mutations in patients. The guidelines cite obtaining a lumbar puncture first with Aβ and tau levels from cerebrospinal fluid (CSF) analysis to guide genetic screening. If levels are abnormal, “genetic mutations linked to AD are searched as first. To determine which gene should be sequenced first (i.e., APP, PSEN1, or PSEN2), patient’s age at onset (AAO) is considered: if the patient has an early age at onset (≤65 years), APP gene (exons 16-17) is sequenced; if negative: all PSEN1 exons  and  flanking  regions;  if  negative: all PSEN2 exons  and  flanking  regions. Instead, if the patient has a late age at onset, PSEN2 gene is the first choice for sequencing, and then APP and PSEN1”.

References  

  1. AA. (2017). Genetic Testing. Retrieved from https://www.alz.org/media/Documents/genetic-testing-statement.pdf
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 Coding Section  

Code 

Number

Description

CPT 

81401

Molecular pathology procedure, Level 2 (eg, 2-10 SNPs, 1 methylated variant, or 1 somatic variant (typically using nonsequencing target variant analysis), or detection of a dynamic mutation disorder/triplet repeat

 

81405

Molecular pathology procedure, Level 6
Gene:
PSEN1 (presenilin 1) (eg, Alzheimer disease), full gene sequence

 

81406

Molecular pathology procedure, Level 7
Gene:
PSEN2(presenilin 2 [Alzheimer disease 4]) (eg, Alzheimer disease), full gene sequence

 

96040

Medical genetics and genetic counseling services, each 30 minutes face-to-face with patient/family 

 

S0265

Genetic counseling, under physician supervision, each 15 minutes

 

S3852

DNA analysis for APOE epsilon 4 allele for susceptibility to Alzheimer's disease

Procedure and diagnosis codes on Medical Policy documents are included only as a general reference tool for each policy. They may not be all-inclusive.

This medical policy was developed through consideration of peer-reviewed medical literature generally recognized by the relevant medical community, U.S. FDA approval status, nationally accepted standards of medical practice and accepted standards of medical practice in this community, Blue Cross and Blue Shield Association technology assessment program (TEC) and other non-affiliated technology evaluation centers, reference to federal regulations, other plan medical policies, and accredited national guidelines.

"Current Procedural Terminology © American Medical Association.  All Rights Reserved" 

History From 2014 Forward     

07/09/2021 

Annual review, no change to policy intent. Updating rationale and references. 

07/15/2020 

Major policy revision that includes medical necessity criteria for this testing. 

07/12/2019 

Annual review, status changed from investigational to not medically necessary for all indications. No other changes made. 

08/08/2018 

Corrected formatting issues and last review date. No other changes. 

07/25/2018 

Annual review, no change to policy intent. 

07/18/2017 

Annual review, reformatting policy statement for clarity, no other changes to policy intent. 

04/25/2017 

Updated category to Laboratory. No other changes. 

10/04/2016 

Annual review, no change to policy intent.

10/29/2015 

Annual review, removing the word familial from the policy title, updated policy verbiage for clarity, no change to intent. Updated background, description, regulatory status, rationale and references. Added guidelines and appendix 1. 

10/08/2014

Annual review, no change to policy intent. Updated rationale and references. Added coding section.


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